Wednesday, December 13, 2023

How to build an incubator for cell culture

https://www.youtube.com/watch?v=YLkIhUHFazg

 From the brave Ukrainian biohacker D. Dantseva of Yanelab

For more videos see her YT channel is here:

https://www.youtube.com/@Yanelab

Please send her a Christmas gift here patreon.com/yanelab so she can build more cool stuff! 

Monday, November 20, 2023

Things that make us smile

 

                                                          DNA plasmid nanodrop result

Rice callus showing new plant growth

Wednesday, November 1, 2023

Project GRFT's 2nd Gene Gun

 David checks the 2nd gene gun that he built for leaks prior to it's departure from CCL to Hector's lab.  If there is any leakage in the tubing or valves, helium, being of low density, will escape.  It is this low density of He, combined with its properties of  being non-reactive, non-toxic, inert and diffusible that make it a good choice as a propellent.  


The first gene gun made used gunpowder as a propellent.  This was crude and dirty compared to today's helium powered gene guns.   Good work, David and Hector.



 

Monday, October 16, 2023

Daria Dantseva, Ukrainian Biohacker

https://www.youtube.com/watch?v=y-M1hp6w2sc

Here's Daria Dantseva speaking at Biohack the Planet.  From her experiences, she has something of great importance to communicate with us about the crucial role biohacking can play in the 21st century. Bravo, Daria.



Thursday, September 14, 2023

Media for micropropagation

 Here's Sesan and Hector in the lab.  What are they doing?


They're making callus initiation media.  



Hector adjusts the pH of the media.  
Organisms each have a favorite pH that they thrive on. 
Rice seems to like their food (the media) a little acidic when we micro propagate. 
Later, the media will be autoclaved and the liquid will be poured into plates.  
Agar will solidify as the media cools.
Rice seed will be dropped on the plates to feast on the media, developing into embryos. Rice calluses form, which are clumps of rice cells that will then be bombarded with DNA coated particles using the gene gun.
Several kinds of media are used in stages as we go along.  
Callus initiation media is the first one. 
About a week after the rice seed is placed on the plate with this media, embryonic growth may start to be observed.  



Wednesday, September 6, 2023

How we make progress: volunteers!

 Do you know that everyone at project GRFT is a volunteer?

Meet Anthony, one of our diligent and hard working volunteers.


Anthony spent the summer taking courses in molecular biology and cell and developmental biology at UC Santa Cruz.  Now he's back and helping out with our work every week.  




Wednesday, August 30, 2023

gene gun


When the button is pushed as shown in this photo, a measured burst of helium gas propels microparticles carrying DNA plasmid into the plant cells. The plant cells that take up the DNA are transformed to express a protein.  This method of getting DNA into plant cells is called particle bombardment.  This is one of project GRFT's two gene guns built by physicist David Johnson, PhD.

Monday, July 31, 2023

Hello flies out from CCL

A group of friends of project GRFT at Oakland's Counter Culture Labs say hello to you. 



Tuesday, June 27, 2023

Project GRFT: How we spend the summer - happiness is a warm gun

 

Our team of volunteers is shooting rice embryos with the gene gun on Saturdays at Counter Culture Labs. 



Sreenivas and Nathaniel from Johns Hopkins University have joined us for the Summer.  They provided the first version of the plasmid containing the griffithsin construct which we have been cloning on Fridays.  The work on Saturday is to get a layer of plasmid to adhere by forming an adsorption ionic bond with 0.7 micron Au microparticles.  This procedure has an element of timing, including vortexing and centrifuging, while keeping everything cool.  Here Anthony prepares a centrifuge.  The rotor is chilled in a freezer before centrifuging.



  First the Au microparticles are washed multiple times with cold ethanol.  The last wash is done with a pH 9.0 borate buffer. 

 

Nathaniel has the pipettes ready with tips and lined up, he will quickly add plasmid, CaCl2, and protamine and vortexed immediately.  



This kept cold while allowing to rest for 10 minutes.  During this time precipitation occurs. 

After centrifuging the supernatant is removed and the precipitate is re-suspended in pure ethanol.

Then the particles are carefully pipetted into the cartridges which will be loaded into the gene gun.  Here David instructs Sreenivas on the cartridge loading. 





The ethanol needs time to evaporate and then the cartridges can be loaded into the gene gun.

Here’s a closer look at the cartridges after loading.



Rice embryos are placed between 2 wire screens in the nozzle of the gene gun.

Sreenivas opens the valve to allow the helium gas to fill the measuring tube of the gene gun before firing.



David furiously takes notes on all of this.

 


 

Thursday, June 8, 2023

working with rice in the lab

 After a wet winter, we're glad that the rainy season is over.  

On project GRFT, we are working with rice. 

Some varieties of rice have been used frequently in plant molecular biology because the are easier to transform.  Transformation is a cellular process where the host organism takes up a DNA plasmid. 

Then the host will express the proteins as desired.

In the project we're doing the chosen host organism is rice, Oryza Japonica, var. Nipponbare


.

Here volunteer Lina prepares rice for plating out.

After husking, the rice gets multiple washings of  sterile distilled water, ethanol and a bleach solution.

We have been improving the process and now the rice when plated out is ready for particle bombardment in one week.


Tuesday, May 23, 2023

Deadly Nipah virus infections are on the increase

"Griffithsin and its synthetictrimeric tandemer (3mG) are under animal trial, showing promising results."

reference from Journal of Biosafety and Biosecurity:

here


Monday, January 30, 2023

Red Cross warning to an unprepared world.

 https://www.aljazeera.com/news/2023/1/30/world-dangerously-unprepared-for-next-pandemic-ifrc


A refresher for those who have been reading these posts or an introduction to those who are new here follows:

GRFT, or Griffithsin is an antiviral lectin. It has shown to inhibit infection by a number of viruses while being itself nontoxic. Project GRFT has a goal of producing GRFT by expression of the gene (derived from a red seaweed) in Oryza (rice).  As rice is a widely grown food crop in many countries of the world, this method has the potential to empower farming communities with limited resources a means to combat viral outbreaks that will undoubtedly occur in the future. We feel that our efforts support global public health, a basic human right.

It should be noted that both Griffithsin and rice are considered nontoxic and safe.

Project GRFT is a group of friends who are volunteering to develop technology to do large scale global biomanufacturing of GRFT through plant molecular biology. 

Project GRFT does not have as its intent to produce pharmaceuticals but rather to provide the raw material for biomanufacturing which we may perhaps call "GRICE"  

As a project of Counter Culture Labs we have non-profit status and we always welcome your donations, both of money and in-kind donations such as supplies (petri dishes, reagents, etc.).  

We are now working in three fully functional laboratories. 

One is located at Counter Culture Labs in Oakland, California

Another is located in Baltimore Maryland at Johns Hopkins University

The newest lab is located near Modesto, California 

This is our effort to respond to the challenge described in the Red Cross warning.